PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014525-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 201aa    MW: 21990.7 Da    PI: 7.626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014525-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-055476123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg+ F ++  L  H++ H
  NNU_014525-RA 54 FECQYCGREFGNSQALGGHQNAH 76
                   89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-65081No hitNo description
Gene3DG3DSA:3.30.160.608.5E-55180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4875481IPR007087Zinc finger, C2H2
PfamPF139126.4E-65478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MADPEIPVPM KPSSEDGNSD DISDRRSASV LKLFGFEVTE SDEVPATIQN SRKFECQYCG  60
REFGNSQALG GHQNAHKKER QRAKRAQFQS SRRFSAAVSP LLNPHAVRSG PFLYSGLPLG  120
IGAAAQLHSP TEYYASPPPM LSSLSSPRLP SWLYVSRPPQ FPVDPDVRPR PALSITQFSE  180
KMPEVEVGVD LHLSLAPSST S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268055.11e-146PREDICTED: zinc finger protein 6-like
TrEMBLF6H7469e-43F6H746_VITVI; Putative uncharacterized protein
STRINGVIT_05s0077g01390.t012e-42(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-14C2H2 family protein